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Submitted: 08 Oct 2021
Revision: 02 Nov 2021
Accepted: 06 Nov 2021
ePublished: 29 Dec 2021
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Avicenna J Clin Microbiol Infect. 2021;8(4): 145-155.
doi: 10.34172/ajcmi.2021.27
  Abstract View: 951
  PDF Download: 693

Original Article

Identification of Potential Glucosyltransferase Inhibitors from Cinnamic Acid Derivatives Using Molecular Docking Analysis: A Bioinformatics Study

Amir Taherkhani 1 ORCID logo, Fateme Ghonji 2, Alireza Mazaheri 3, Mohammad Parsa Lohrasbi 4, Zeinab Mohamadi 3, Zahra Khamverdi 2,5* ORCID logo

1 Research Center for Molecular Medicine, Hamadan University of Medical Sciences, Hamadan, Iran
2 Faculty of Dentistry, Borujerd Branch, Islamic Azad University, Borujered, Iran
3 Department of Operative Dentistry, Dental School, Hamadan University of Medical Sciences, Hamadan, Iran
4 Dental School, Silesia Medical University, Katowice, Poland
5 Dental Research Center, Department of Operative Dentistry, Dental School, Hamadan University of Medical Sciences, Hamadan, Iran
*Corresponding Author: *Corresponding author: Zahra Khamverdi, Faculty of Dentistry, Borujerd Branch, Islamic Azad University, Borujered, Iran; Dental Research Center, Department of Operative Dentistry, Dental School, Hamadan University of Medical Sciences, Hamadan, Iran. Fax: +98-8138381085, Phone: +98-9183122095, Email: , Email: dr.zahra.khamverdi@gmail.com

Abstract

Background: Dental caries is one of the most common oral chronic diseases. Streptococcus mutans is the main pathogenic bacteria playing a role in degrading the mineral texture of the teeth. Glucosyltransferase (GTFase) of S. mutans is responsible for producing glucan, which is the main exopolysaccharide found in the cariogenic biofilms. Further, previous studies have reported that cinnamic acid diminished biofilm formation of S. mutans. Therefore, we hypothesized that cinnamic acid and its derivatives might act as GTFase inhibitors.

Methods: The binding affinity of a total of 12 plant-based compounds including cinnamic acid and its 11 derivatives to the GTFase active site were examined by utilizing the AutoDock tool. The possible interactions between top-ranked cinnamic acid derivatives and the residues within the GTFase catalytic site were also taken into consideration.

Results: Five of the cinnamic acid derivatives including rosmarinic acid (RA), cynarine, chlorogenic acid (CGA), caffeic acid 3-glucoside, and N-p-coumaroyltyramine demonstrated inhibitory effects on GTFase at nanomolar concentration. Stabilizing interactions such as π–π stack pairing and pi-charge interactions were detected between top-ranked GTFase inhibitors and residues within the enzyme active site.

Conclusions: The present study suggests that RA, cynarine, CGA, caffeic acid 3-glucoside, and N-p-coumaroyltyramine might have protective effects on dental caries, and therefore, may be considered as anti-tooth caries compounds.



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